Example Of Convergent Evolution Research Articles

The operation of PEPCK increases light harvesting plasticity in C4 NAD-ME and NADP-ME photosynthetic subtypes: A theoretical study.

The repeated emergence of NADP-malic enzyme (ME), NAD-ME and phosphoenolpyruvatecarboxykinase (PEPCK) subtypes of C4 photosynthesis are iconic examples of convergent evolution, which suggests that these biochemistries do not randomly assemble, but are instead specific adaptations resulting from unknown evolutionary drivers. Theoretical studies that are based on the classic biochemical understanding have repeatedly proposed light-use efficiency as a possible benefit of the PEPCK subtype. However, quantum yield measurements do not support this idea. We explore this inconsistency here via an analytical model that features explicit descriptions across a seamless gradient between C4 biochemistries to analyse light harvesting and dark photosynthetic metabolism. Our simulations show that the NADP-ME subtype, operated by the most productive crops, is the most efficient. The NAD-ME subtype has lower efficiency, but has greater light harvesting plasticity (the capacity to assimilate CO2 in the broadest combination of light intensity and spectral qualities). In both NADP-ME and NAD-ME backgrounds, increasing PEPCK activity corresponds to greater light harvesting plasticity but likely imposed a reduction in photosynthetic efficiency. We draw the first mechanistic links between light harvesting and C4 subtypes, providing the theoretical basis for future investigation.

Assembly and analysis of the genome of Notholithocarpus densiflorus.

Tanoak (Notholithocarpus densiflorus) is an evergreen tree in the Fagaceae family found in California and southern Oregon. Historically, tanoak acorns were an important food source for Native American tribes and the bark was used extensively in the leather tanning process. Long considered a disjunct relictual element of the Asian stone oaks (Lithocarpus spp.), phylogenetic analysis has determined that the tanoak is an example of convergent evolution. Tanoaks are deeply divergent from oaks (Quercus) of the Pacific Northwest and comprise a new genus with a single species. These trees are highly susceptible to 'sudden oak death' (SOD), a plant pathogen (Phytophthora ramorum) that has caused widespread mortality of tanoaks. Here, we set out to assemble the genome and perform comparative studies among a number of individuals that demonstrated varying levels of susceptibility to SOD. First, we sequenced and de novo assembled a draft reference genome of N. densiflorus using co-barcoded library processing methods and an MGI DNBSEQ-G400 sequencer. To increase the contiguity of the final assembly, we also sequenced Oxford Nanopore (ONT) long reads to 30X coverage. To our knowledge, the draft genome reported here is one of the more contiguous and complete genomes of a tree species published to date, with a contig N50 of ∼1.2 Mb, a scaffold N50 of ∼2.1 Mb, and a complete gene score of 95.5% through BUSCO analysis. In addition, we sequenced 11 genetically distinct individuals and mapped these onto the draft reference genome enabling the discovery of almost 25 million single nucleotide polymorphisms and ∼4.4 million small insertions and deletions. Finally, using co-barcoded data we were able to generate complete haplotype coverage of all 11 genomes.

The Genetic Basis of Melanism in Abert's Squirrel (Sciurus aberti).

Melanism is widespread in different taxa and has been hypothesized to provide adaptive benefits in certain environments. Melanism is typically caused by mutations in one of two regulatory genes: the Melanocortin 1 Receptor (MC1R) or the Agouti Signaling Protein (ASIP). Melanism has repeatedly evolved among tree squirrels and their relatives (tribe Sciurini) in at least 12 different species based on our review of the literature. The causal mutations for melanism have been characterized in two species so far. This study examines Abert's Squirrel (Sciurus aberti), which has a melanistic morph whose genetic basis has not yet been established. We sequenced the MC1R and ASIP genes for five wild-type and seven melanistic S. aberti individuals to search for melanism-associated mutations. A novel single base pair mutation in the ASIP gene, unique to S. aberti, was found to be associated with melanism in the species, indicating that melanism in S. aberti evolved independently from other tree squirrels and thus represents an example of convergent evolution. The independent evolution of melanism in this species suggests that there is an adaptive advantage to the melanistic phenotype. The geographic range and habitat of S. aberti suggest possible benefits associated with thermoregulation, post-forest-fire camouflage, or other untested hypotheses.

Nuclear phylogenomics of Asteraceae with increased sampling provides new insights into convergent morphological and molecular evolution

Convergent morphological evolution is widespread in flowering plants, and understanding this phenomenon relies on well-resolved phylogenies. Nuclear phylogenetic reconstruction using transcriptome datasets has been successful in various angiosperm groups, but it is limited to taxa with available fresh materials. Asteraceae, which are one of the two largest angiosperm families and are important for both ecosystems and human livelihood, show multiple examples of convergent evolution. Nuclear Asteraceae phylogenies have resolved relationships among most subfamilies and many tribes, but many phylogenetic and evolutionary questions regarding subtribes and genera remain, owing to limited sampling. Here, we increased the sampling for Asteraceae phylogenetic reconstruction using transcriptomes and genome-skimming datasets and produced nuclear phylogenetic trees with 706 species representing two-thirds of recognized subtribes. Ancestral character reconstruction supports multiple convergent evolutionary events in Asteraceae, with gains and losses of bilateral floral symmetry correlated with diversification of some subfamilies and smaller groups, respectively. Presence of the calyx-related pappus may have been especially important for the success of some subtribes and genera. Molecular evolutionary analyses support the likely contribution of duplications of MADS-box and TCP floral regulatory genes to innovations in floral morphology, including capitulum inflorescences and bilaterally symmetric flowers, potentially promoting the diversification of Asteraceae. Subsequent divergences and reductions in CYC2 gene expression are related to the gain and loss of zygomorphic flowers. This phylogenomic work with greater taxon sampling through inclusion of genome-skimming datasets reveals the feasibility of expanded evolutionary analyses using DNA samples for understanding convergent evolution.

Regional variability in remotely sensed data with respect to the distribution of some snapper fishes (Family: Lutjanidae) between the Red Sea and the Arabian Gulf

Geographically dissimilar aquatic ecosystems from similar origin promote our comprehensive understanding of the role of abiotic factors in the distribution of biodiversity from one extreme, and they provide outstanding examples of convergent evolution in biological diversity on the other extreme. A new approach to monitoring and management of fisheries and marine ecosystems is required. Sea Surface Temperature (SST) and Chlorophyll-a (Chl-a) concentration are both crucial environmental variables that have significant impacts on marine ecosystems, particularly for fishes and overall aquatic life. These factors play important roles in shaping the health, distribution, behavior, and productivity of marine organisms. In the current study, Modis-aqua daily SST and Chl-a derived data from 2002 to 2022 were loaded into MATLAB, analyzed, and compared between the Arabian Gulf and Red Sea (Egyptian territory). Additionally, the catch of the family Lutjanidae (snapper fish) was recorded in 2002 to determine the distribution of napper fish species and compare production (based on data available from 2002 to 2022) in relation to SST and Chl-a variabilities. According to the current study, Chl-a in the Arabian Gulf showed narrow fluctuations during the winter and spring months, but higher than the Red Sea, and had a significant increase in sea surface temperature (SST) throughout the summer compared to the Red Sea. Spatial and temporal interaction between the means of Chl-a and SST was significantly different (P < 0.01). On the other hand, the results showed that different thermal stresses were experienced by the Arabian Gulf and the Red Sea, as shown by the total positive SST anomaly and by events occurring in different trends. Both the total catch of lutjanid snappers and the species identified by DNA barcoding varied significantly between the two geographical regions. The current work suggests using large-scale, fisheries-independent data to map the main gradients in marine fish community and species abundance and forecast their future distribution in connection to climate change.

Distinctive plastome evolution in carnivorous angiosperms

BackgroundIndependent origins of carnivory in multiple angiosperm families are fabulous examples of convergent evolution using a diverse array of life forms and habitats. Previous studies have indicated that carnivorous plants have distinct evolutionary trajectories of plastid genome (plastome) compared to their non-carnivorous relatives, yet the extent and general characteristics remain elusive.ResultsWe compared plastomes from 9 out of 13 carnivorous families and their non-carnivorous relatives to assess carnivory-associated evolutionary patterns. We identified inversions in all sampled Droseraceae species and four species of Utricularia, Pinguicula, Darlingtonia and Triphyophyllum. A few carnivores showed distinct shifts in inverted repeat boundaries and the overall repeat contents. Many ndh genes, along with some other genes, were independently lost in several carnivorous lineages. We detected significant substitution rate variations in most sampled carnivorous lineages. A significant overall substitution rate acceleration characterizes the two largest carnivorous lineages of Droseraceae and Lentibulariaceae. We also observe moderate substitution rates acceleration in many genes of Cephalotus follicularis, Roridula gorgonias, and Drosophyllum lusitanicum. However, only a few genes exhibit significant relaxed selection.ConclusionOur results indicate that the carnivory of plants have different effects on plastome evolution across carnivorous lineages. The complex mechanism under carnivorous habitats may have resulted in distinctive plastome evolution with conserved plastome in the Brocchinia hechtioides to strongly reconfigured plastomes structures in Droseraceae. Organic carbon obtained from prey and the efficiency of utilizing prey-derived nutrients might constitute possible explanation.

Three Blind Moles: Molecular Evolutionary Insights on the Tempo and Mode of Convergent Eye Degeneration in Notoryctes typhlops (Southern Marsupial Mole) and Two Chrysochlorids (Golden Moles).

Golden moles (Chrysochloridae) and marsupial moles (Notoryctidae) are textbook examples of convergent evolution. Both taxa are highly adapted to subterranean lifestyles and have powerful limbs for digging through the soil/sand, ears that are adapted for low-frequency hearing, vestigial eyes that are covered by skin and fur, and the absence of optic nerve connections between the eyes and the brain. The eyes of marsupial moles also lack a lens as well as retinal rods and cones. Two hypotheses have been proposed to account for the greater degeneracy of the eyes of marsupial moles than golden moles. First, marsupial moles may have had more time to adapt to their underground habitat than other moles. Second, the eyes of marsupial moles may have been rapidly and recently vestigialized to (1) reduce the injurious effects of sand getting into the eyes and (2) accommodate the enlargement of lacrimal glands that keep the nasal cavity moist and prevent the entry of sand into the nasal passages during burrowing. Here, we employ molecular evolutionary methods on DNA sequences for 38 eye genes, most of which are eye-specific, to investigate the timing of relaxed selection (=neutral evolution) for different groups of eye-specific genes that serve as proxies for distinct functional components of the eye (rod phototransduction, cone phototransduction, lens/cornea). Our taxon sampling included 12 afrothere species, of which two are golden moles (Amblysomus hottentotus, Chrysochloris asiatica), and 28 marsupial species including two individuals of the southern marsupial mole (Notoryctes typhlops). Most of the sequences were mined from databases, but we also provide new genome data for A. hottentotus and one of the two N. typhlops individuals. Even though the eyes of golden moles are less degenerate than the eyes of marsupial moles, there are more inactivating mutations (e.g., frameshift indels, premature stop codons) in their cone phototransduction and lens/cornea genes than in orthologous genes of the marsupial mole. We estimate that cone phototransduction recovery genes were inactivated first in each group, followed by lens/cornea genes and then cone phototransduction activation genes. All three groups of genes were inactivated earlier in golden moles than in marsupial moles. For the latter, we estimate that lens/cornea genes were inactivated ~17.8 million years ago (MYA) when stem notoryctids were burrowing in the soft soils of Australian rainforests. Selection on phototransduction activation genes was relaxed much later (5.38 MYA), during the early stages of Australia's aridification that produced coastal sand plains and eventually sand dunes. Unlike cone phototransduction activation genes, rod phototransduction activation genes are intact in both golden moles and one of the two individuals of N. typhlops. A second marsupial mole individual has just a single inactivating mutation in one of the rod phototransduction activation genes (PDE6B). One explanation for this result is that some rod phototransduction activation genes are pleiotropic and are expressed in extraocular tissues, possibly in conjunction with sperm thermotaxis.

A genomic test of subspecies in the Eunota togata species group (Coleoptera: Cicindelidae): Morphology masks evolutionary relationships and taxonomy

Most of the world’s biodiversity is described primarily or exclusively using morphological traits that may not always reflect the true evolutionary units. Accurate taxonomy is critical for conservation efforts and re-evaluation of traditional taxonomy may often be warranted since species and subspecies are frequently the focus of conservation and faunistic studies. Here, we test comprehensive taxonomic hypotheses of morphologically defined subspecies in the tiger beetle, Eunota togata (LaFerté-Sénectère, 1841). The four recognized subspecies were delineated based mainly on the dorsal coloration and extent of white markings termed maculations. We combine inferences from mtDNA genealogies and genome-wide multilocus data to elucidate the evolutionary relationships within the group and assess the taxonomic implications. Three of the four subspecific taxa delineated by morphology were not supported by the genomic or mtDNA data. In fact, the species-level diversity in this group was underestimated, as E. togata was found to represent three well-supported distinct species in all genetic analyses. Emerging from these analyses, we also document an intriguing example of convergent evolution in lighter colored E. togata adapting to similar white saline backgrounds. Our collective work underscores the importance of using molecular methods to reevaluate morphological based taxonomy for species and subspecies delimitation and conservation.

Behavioural adjustments enable the colonization of subterranean environments

Abstract Specialized subterranean species are iconic examples of convergent evolution driven by environmental constraints, representing an ideal model system for eco-evolutionary studies. However, scientific research on the behavioural adaptations of subterranean organisms has lagged and is biased mostly towards a few model species. Through a systematic literature review, we aimed to assess quantitatively whether a congruent evolution of behavioural traits among subterranean species exists. We considered four types of behaviours (exploratory, feeding, social and anti-predator) and tested predictions about their occurrence among species with different degrees of adaptation to subterranean environments. We argue that these behaviours constitute the earliest adaptations to three main ecological factors characterizing subterranean habitats, namely the constant darkness, the limited food resources and the reduced predator pressure. Darkness selects for individuals that rely on non-visual cues to explore their surroundings, track food resources and locate potential sexual partners. The reduced availability of food promotes high foraging plasticity and deters species from adopting aggressive behaviours towards conspecifics. The reduced predator pressure allows species to abandon specific anti-predator behaviours and permits safer execution of their biological activities. Our analyses show that these four behaviours are likely to represent the result of an early convergent adaptation to the subterranean realm.

PhyloAcc-GT: A Bayesian method for inferring patterns of substitution rate shifts on targeted lineages accounting for gene tree discordance.

An important goal of evolutionary genomics is to identify genomic regions whose substitution rates differ among lineages. For example, genomic regions experiencing accelerated molecular evolution in some lineages may provide insight into links between genotype to phenotype. Several comparative genomics methods have been developed to identify genomic accelerations between species, including a Bayesian method called PhyloAcc, which models shifts in substitution rate in multiple target lineages on a phylogeny. However, few methods consider the possibility of discordance between the trees of individual loci and the species tree due to incomplete lineage sorting, which might cause false positives. Here we present PhyloAcc-GT, which extends PhyloAcc by modeling gene tree heterogeneity. Given a species tree, we adopt the multispecies coalescent model as the prior distribution of gene trees, use Markov chain Monte Carlo (MCMC) for inference, and design novel MCMC moves to sample gene trees efficiently. Through extensive simulations, we show that PhyloAcc-GT outperforms PhyloAcc and other methods in identifying target-lineage-specific accelerations and detecting complex patterns of rate shifts, and is robust to specification of population size parameters. PhyloAcc-GT is usually more conservative than PhyloAcc in calling convergent rate shifts because it identifies more accelerations on ancestral than on terminal branches. We apply PhyloAcc-GT to two examples of convergent evolution: flightlessness in ratites and marine mammal adaptations, and show that PhyloAcc-GT is a robust tool to identify shifts in substitution rate associated with specific target lineages while accounting for incomplete lineage sorting.

Hidden functional complexity in the flora of an early land ecosystem.

The first land ecosystems were composed of organisms considered simple in nature, yet the morphological diversity of their flora was extraordinary. The biological significance of this diversity remains a mystery largely due to the absence of feasible study approaches. To study the functional biology of Early Devonian flora, we have reconstructed extinct plants from fossilised remains in silico. We explored the morphological diversity of sporangia in relation to their mechanical properties using finite element method. Our approach highlights the impact of sporangia morphology on spore dispersal and adaptation. We discovered previously unidentified innovations among early land plants, discussing how different species might have opted for different spore dispersal strategies. We present examples of convergent evolution for turgor pressure resistance, achieved by homogenisation of stress in spherical sporangia and by torquing force in Tortilicaulis-like specimens. In addition, we show a potential mechanism for stress-assisted sporangium rupture. Our study reveals the deceptive complexity of this seemingly simple group of organisms. We leveraged the quantitative nature of our approach and constructed a fitness landscape to understand the different ecological niches present in the Early Devonian Welsh Borderland flora. By connecting morphology to functional biology, these findings facilitate a deeper understanding of the diversity of early land plants and their place within their ecosystem.

Clade-specific forebrain cytoarchitectures of the extinct Tasmanian tiger

The thylacine, or Tasmanian tiger, is the largest of modern-day carnivorous marsupials and was hunted to extinction by European settlers in Australia. Its physical resemblance to eutherian wolves is a striking example of evolutionary convergence to similar ecological niches. However, whether the neuroanatomical organization of the thylacine brain resembles that of canids and how it compares with other mammals remain unknown due to the scarcity of available samples. Here, we gained access to a century-old hematoxylin-stained histological series of a thylacine brain, digitalized it at high resolution, and compared its forebrain cellular architecture with 34 extant species of monotremes, marsupials, and eutherians. Phylogenetically informed comparisons of cortical folding, regional volumes, and cell sizes and densities across cortical areas and layers provide evidence against brain convergences with canids, instead demonstrating features typical of marsupials, and more specifically Dasyuridae, along with traits that scale similarly with brain size across mammals. Enlarged olfactory, limbic, and neocortical areas suggest a small-prey predator and/or scavenging lifestyle, similar to extant quolls and Tasmanian devils. These findings are consistent with a nonuniformity of trait convergences, with brain traits clustering more with phylogeny and head/body traits with lifestyle. By making this resource publicly available as rapid web-accessible, hierarchically organized, multiresolution images for perpetuity, we anticipate that additional comparative insights might arise from detailed studies of the thylacine brain and encourage researchers and curators to share, annotate, and preserve understudied material of outstanding biological relevance.

The protobranch Aequiyoldia eightsii (Jay, 1839) (Nuculanida: Sareptidae) reveals uncommon siphonal anatomy among bivalves

ABSTRACT Siphons represent a remarkable example of evolutionary convergence in different bivalve lineages. In Protobranchia, the siphons, when present, are used exclusively to channel the water currents used for respiration, waste removal and gamete release. Their emergence is thought to be associated with the taxonomic and morphological diversification within the Nuculanida. While siphons have been extensively studied in other bivalve groups, particularly the Heterodonta, gaps remain in the knowledge of protobranch siphons, especially on their morphology, including the musculature and innervation, and their functioning. The few data on Protobranchia siphons are restricted to some Nuculanoidea, and information is still missing for other nuculanid lineages, such as the Sareptoidea. The present study provides a description of the siphonal morphology of Aequiyoldia eightsii, a sareptid bivalve. Histological data were obtained to investigate their organization and infer their functioning. All traits observed were compared with those of heterodont siphons. In A. eightsii, the siphons are fused with each other and distinguished by their reduced longitudinal musculature in bundles that do not form layers, by the presence of a blood lacunal system that fills most of the wall of the siphon and by the innervation that is likely diffuse. This suggests that the siphons are hydrostatic organs with a hydraulic mechanism whose expansion occurs when the lacunar system is filled with blood. Our results provide the first morphological and functional details of a protobranch siphon and thus contribute to knowledge on the comparative anatomy of Bivalvia.

A Machine Learning Framework Identifies Plastid-Encoded Proteins Harboring C3 and C4 Distinguishing Sequence Information.

C4 photosynthesis is known to have at least 61 independent origins across plant lineages making it one of the most notable examples of convergent evolution. Of the >60 independent origins, a predicted 22-24 origins, encompassing greater than 50% of all known C4 species, exist within the Panicoideae, Arundinoideae, Chloridoideae, Micrairoideae, Aristidoideae, and Danthonioideae (PACMAD) clade of the Poaceae family. This clade is therefore primed with species ideal for the study of genomic changes associated with the acquisition of the C4 photosynthetic trait. In this study, we take advantage of the growing availability of sequenced plastid genomes and employ a machine learning (ML) approach to screen for plastid genes harboring C3 and C4 distinguishing information in PACMAD species. We demonstrate that certain plastid-encoded protein sequences possess distinguishing and informative sequence information that allows them to train accurate ML C3/C4 classification models. Our RbcL-trained model, for example, informs a C3/C4 classifier with greater than 99% accuracy. Accurate prediction of photosynthetic type from individual sequences suggests biologically relevant, and potentially differing roles of these sequence products in C3 versus C4 metabolism. With this ML framework, we have identified several key sequences and sites that are most predictive of C3/C4 status, including RbcL, subunits of the NAD(P)H dehydrogenase complex, and specific residues within, further highlighting their potential significance in the evolution and/or maintenance of C4 photosynthetic machinery. This general approach can be applied to uncover intricate associations between other similar genotype-phenotype relationships.

Integrated global analysis in spider flowers illuminates features underlying the evolution and maintenance of C4 photosynthesis.

The carbon concentrating mechanism-C4 photosynthesis-represents a classic example of convergent evolution, but how this important trait originated and evolved remains largely enigmatic. The spider flower Gynandropsis gynandra is a valuable leafy vegetable crop and medicinal plant that has also been recognized as a C4 model species. Here we present a high-quality chromosome-scale annotated genome assembly of G. gynandra through a combination of Oxford Nanopore Technology (ONT), HiFi and Hi-C technology. The 17 super-scaffolds cover 98.66% of the estimated genome (997.61Mb), with a contig N50 of 11.43Mb and a scaffold N50 of 51.02Mb. Repetitive elements occupy up to 71.91% of its genome, and over half are long terminal repeat retrotransposons (LTR-RTs) derived from recent bursts, contributing to genome size expansion. Strikingly, LTR-RT explosion also played a critical role in C4 evolution by altering expression features of photosynthesis-associated genes via preferential insertion in promoters. Integrated multiomics analyses of G. gynandra and the ornamental horticulture C3 relative Tarenaya hassleriana reveal that species-specific whole-genome duplication, gene family expansion, recent LTR-RT amplification, and more recent tandem duplication events have all facilitated the evolution of C4 photosynthesis, revealing uniqueness of C4 evolution in the Cleome genus. Moreover, high leaf vein density and heat stress resilience are associated with shifted gene expression patterns. The mode of C3-to-C4 transition found here yields new insights into evolutionary convergence of a complex plant trait. The availability of this reference-grade genomic resource makes G. gynandra an ideal model system facilitating efforts toward C4-aimed crop engineering.

Morphological and radiological mapping of dental cusps in relation to spatial constraints on tooth shape of one-humped camel (Camelus dromedarius)

A significant number of researches in veterinary study have been focused on dental structure; however, there are few on the orientation and identification of their cusps. Therefore, the present article aimed to spotlight the arrangement pattern of dental cusps in the camel as a folivorous and graminivorous animal. This study was conducted on eight heads of adult, healthy camels of both sexes, collected from slaughter houses. To determine the exact orientation of cusps of molar teeth, additional radiological and CT scans were performed on the mandible as a landmark that should facilitate the reading of the cusps map. It was evident that the cusps are arranged in crescentic appearance, selenodontal form, with two cusps on each side, paracone and hypocone on the lingual surface and protocone and metacone on the vestibular aspect. Thus, camels cannot wear bite like equines, which would interfere with their constant chewing method. The camels’ dental cusps provide some of the finest examples of convergent evolution, which offer insights both into correlates between form and function, and into the ability of euthomorphic cusps in intrapability and stabilization of food items and their comminution between formidable cusps and occlusal spillway in between. Further studies should be done on the brachydont teeth and tropospheric cusps to fill the functional anatomy gap of teeth, in addition to diversity of cusps form. This study is considered a basic comparative anatomical study for normal healthy dentition and forensic practice, in addition to its importance in detection of more local aspects of dental problems in camels.

Convergent morphology and anatomy in the microphyllous leaves of selected heathland Myrtaceae and Asteraceae

Key messageWe examined leaves of a suite of microphyllous woody plants and describe a little-known form of leaf peltation for the first time and also investigate strongly reflexed leaves in two distantly related lineages.Plants cope with a range of environmental conditions, especially related to water relations, and have developed an array of physiological and structural solutions to maintain a functional water balance. There has been considerable recent work on physiological solutions to water deficit but little attention paid to leaf characteristics. In many species there is a change in leaf form from seedlings to adults. We examine such changes in several small-leaved species from the distantly related Asteraceae and Myrtaceae, some of which develop micropeltate or reflexed leaves as adults. All are native to dry or seasonally dry sites. Three major morphological groups were recognised as follows: (1) leaves erect, nonpeltate and scale-like (Ozothamnus hookeri), (2) leaves erect and peltate (Phaenocoma prolifera, Regelia inops), (3) Leaves reflexed (Olearia lepidophylla, Ozothamnus scutellifolius, Ozothamnus reflexifolius, Melaleuca diosmifolia). The microphyllous peltation in P. prolifera and R. inops in the absence of a meristematic fusion/bridge differs from typically peltate leaves. These small-leaved taxa occur in open, high light environments which are very different from the mesic, shaded understorey habitats of typical peltate-leaved plants. Many small-leaved species have leaves closely appressed to the stem and often with recurved margins. The erect leaves are functionally similar to reflexed leaves. Environmental filtering leads to superficially similar plant forms that may have somewhat different ontological origins. Such morphological forms are examples of convergent evolution in distantly related species but within each family are likely phylogenetically related.

Eye development and developmental expression of crystallin genes in the long arm octopus, Octopus minor

The eye of a cephalopod is a well-known example of convergent evolution and resembles the vertebrate eye. Although cephalopods and vertebrates exhibit similar eye form and function, they differ in visual origin and structure. The common long-arm octopus (Octopus minor) is a good model system in evolutionary and developmental studies due to its highly centralized nervous system, shorter life cycle, and specific camera-type eyes that contribute to convergence with vertebrate eye. Lens-containing eyes represent a significant improvement of simple eye and have evolved by convergent mechanisms, a variety of lenses and corneas containing diverse crystallin. The diversity and taxon-specificity of lens crystallin is indicative of convergent evolution of crystallin roles. Previous studies have focused on morphological, ontogenetic and phylogenetic analysis of crystallin to understand the evolution of lens-containing eyes. However, little is known about the functional analysis of taxon-specific crystallin genes at the molecular level in the eye of O. minor. Using an embryonic staging system of Octopus minor as a model system, we investigated fifteen genomes and the structure of eye by immunohistochemistry, phalloidin staining and the three-dimensional structures. We also obtained the crystallin-related genes (i.e., α-, S-, and Ω-crystallin) from the transcriptome data of O. minor. Subsequent molecular phylogenetic analysis based on these genes revealed a distinct divergence pattern among the three gene classes and further suggested the evidence supporting the taxon-specific convergent evolutionary trend. We analyzed the expression pattern of crystallin genes via in situ hybridization during developmental stages. All crystallin genes are commonly expressed in the lentigenic cells of ciliary body. The α-crystallin found in cephalopods was also expressed at the peripheral region of the lens including ciliary body, suggesting a possible role in lens formation in cephalopods. This study will provide information on the eye development of O. minor and support the typical models of convergent evolution by demonstrating independent recruitment of different types of proteins to fulfill their unique visual role.

The evolution and diversification of growth strategies in abelisauroid theropods

ABSTRACT Theropods comprise a successful group of mostly predatory dinosaurs with varied growth rates that colonized all continents. Much research has addressed the histology of the Global North’s Mesozoic populations, especially coelurosaurians and allosauroids. However, little has been done to understand the histological patterns of the Gondwanan populations, especially abelisauroids. Previous studies detected disparate (parallel-fibered or fibrolamellar) bone profiles between noasaurids and abelisaurids but did not include broader quantitative analyses. Here we describe the femoral histology of a mid-sized abelisaurid from the Upper Cretaceous Serra da Galga Formation, Bauru Group, Southeast Brazil. Despite the harsh semiarid paleotropical context, our specimen shows a growth rate more similar to the Patagonian abelisaurids, challenging a previous hypothesis on environmental pressure selecting taxa with lower growth rates and parallel-fibered bone tissue. We also bring data to bear from several taxa to test the hypothesis of tissue differentiation within abelisauroid clades. Our logistic regression and correlation analyses show that the variation in histology in noasaurids and abelisaurids can be explained by body size and phylogeny when considering fibrolamellar tissue, but not parallel-fibered tissue. A decrease in growth rate through the deposition of parallel-fibered bone tissue may be an example of evolutionary convergence between noasaurids and some small-bodied sauropods.

Decoupling peptide binding from T cell receptor recognition with engineered chimeric MHC-I molecules

Abstract Human leucocyte antigens (HLAs) display a repertoire of epitopic peptides on the cell surface for T cell recognition. Amino acid polymorphisms in the peptide-binding groove of different HLA allotypes result in distinct antigenic repertoires, providing a basis for adaptive immunity to emerging pathogens at the population level. T cell receptors (TCRs) recognize pHLA antigens through interactions with both peptide and heavy chain residues. In this work, we use structural data from peptide:MHC-I and pMHC:TCR structures to identify residues important for peptide and/or TCR binding, and we outline a fixed-backbone computational design approach for engineering synthetic molecules that combine peptide binding and TCR recognition surfaces from existing HLA allotypes. X-ray crystallography demonstrates that chimeric molecules bridging divergent HLA alleles can bind selected peptide antigens in a specified backbone conformation. Moreover, in vitro tetramer staining and biophysical binding experiments using chimeric pMHC-I molecules presenting established antigens further demonstrate the requirement of TCR recognition on interactions with HLA framework residues, as opposed to interactions with peptide-centric Chimeric Antigen Receptors (CARs). Our results underscore a novel, structure-guided platform for developing synthetic HLA molecules displaying tumor-associated antigens with modified TCR interaction surfaces, which could further serve as platforms to elicit alloreactive T cell responses against self-antigens that are overexpressed in cancer. Finally, we gain a deeper understanding of the evolution and functional divergence of the different HLA allotypes by demonstrating an example of convergent evolution. Supported by grants from NIAID (5R01AI143997), NIGMS (5R35GM125034), and NIDDK (5U01DK112217)